KE LAB
PUBLICATIONS
2024
115. A Programmable DNAzyme for the Sensitive Detection of Nucleic Acids
C Shi, D Yang, X Ma, L Pan, Y Shao, G Arya, Y Ke, C Zhang, F Wang, X Zuo, M Li, P Wang. Angewandte Chemie International Edition, 2024. e202320179
114. DNA-Nanostructure-Guided Assembly of Proteins into Programmable Shapes
Q Lu, Y Xu, E Poppleton, K Zhou, P Sulc, N Stephanopoulos, Y Ke. Nano Letters 2024. 24, 5, 1703–1709
2023
113. Dynamic Gold Nanostructures Based on DNA Self Assembly
B Kou, Z Wang, S Mousavi, P Wang, Y Ke. Small 2023. 2308862
112. Controlling Silicification on DNA Origami with Polynucleotide Brushes
S Wang, PA Lin, M DeLuca, S Zauscher, G Arya, Y Ke. Journal of the American Chemical Society 2023. 146 (1), 358-367
111. Spatiotemporal Control over Polynucleotide Brush Growth on DNA Origami Nanostructures
Y Yang, Q Lu, Y Chen, M DeLuca, G Arya, Y Ke, S Zauscher. Angewandte Chemie International Edition 2023. 62 (48), e202311727
110. Deep inverse design of hydrophobic patches on DNA origami for mesoscale assembly of superlattices
PA Lin, S Ren, J Piland, L Collins, S Zauscher, Y Ke, G Arya. AI for Accelerated Materials Design-NeurIPS 2023 Workshop
109. Detection of cellular traction forces via the force-triggered Cas12a-mediated catalytic cleavage of a fluorogenic reporter strand
Y Duan, F Szlam, Y Hu, W Chen, R Li, Y Ke, R Sniecinski, K Salaita. Nature Biomedical Engineering 2023. 7 (11), 1404-1418
108. A Spatially Programmable DNA Nanorobot Arm to Modulate Anisotropic Gold Nanoparticle Assembly by Enzymatic Excision
J Yang, Y Liang, X Li, Y Zhang, L Qian, Y Ke, C Zhang. Angewandte Chemie 2023. 135 (43), e202308797
107. Circular single-stranded DNA as switchable vector for gene expression in mammalian cells
L Tang, Z Tian, J Cheng, Y Zhang, Y Song, Y Liu, J Wang, P Zhang, Y Ke, F Simmel, J Song. Nature Communications 2023. 14 (1), 6665
106. Building Large DNA Bundles via Controlled Hierarchical Assembly of DNA Tubes
Y Zhang, D Yang, P Wang, Y Ke. ACS nano 2023.
105. DNA origami-designed 3D phononic crystals
SH Park, H Park, JM Nam, Y Ke, T Liedl, Y Tian, S Lee. Nanophotonics 2023
104. Bionanomechanical Devices for Uses in Evaluating Liquid Dynamics
D Myers, Y Ke, V Pan, S Dahotre, G Kwong. US Patent App. 17/908,517
103. Recent Advances in DNA Origami-Engineered Nanomaterials and Applications
P Zhan, A Peil, Q Jiang, D Wang, S Mousavi, Q Xiong, Q Shen, Y Shang, B Ding, C Lin, Y Ke, N Liu. Chemical Reviews 2023. 123 (7), 3976-4050
102. Structure-Dependent Electrical Conductance of DNA Origami Nanowires
J Marrs, Q Lu, V Pan, Y Ke, J Hihath. ChemBioChem 24 (2), e202200454
101. Unraveling mechanotransduction in T cells with DNA nanotechnology
Sterling, S.; Ke, Y. Trends in Chemistry 2023.
2022
100. Cooperative binding of T cell receptor and CD4 to peptide-MHC enhances antigen sensitivity
MN Rushdi, V Pan, K Li, HK Choi, S Travaglino, J Hong, F Griffitts, Pragati Agnihotri, Roy A Mariuzza, Yonggang Ke, Cheng Zhu. Nature communications 13 (1), 7055
99. A bistable and reconfigurable molecular system with encodable bonds
Zhou, C.; Yang, D.; Sensale, S.; Sharma, P.; Wang, D.; Lei Yu, L.; Arya, G.; Ke, Y.; Wang, P. Science Advances 2022. 8(46), eade3003.
98. Seeded growth of adaptive tiles on DNA origami
Liu, Y.; Cheng, J.; Wang, Y.; Ji, B.; Tang, L.; Zou, K.; Xie, Y.; Cui, D.; Ke, Y.; Song, J. Cell Reports Physical Science 2022. 3(9), 101040. [PDF]
97. Design of Uracil-Modified DNA Nanotubes for Targeted Drug Release via DNA-Modifying Enzyme Reactions
Deng, Y.; Tan, Y.; Zhang, Y.; Zhang, L.; Zhang, C.; Ke, Y.; Su, X. ACS Applied Materials & Interfaces 2022, 14 (30), 34470-34479. [PDF]
96. Stress in DNA Gridiron Facilitates the Formation of Two-Dimensional Crystalline Structures
Yu, L.; Cheng, J.; Wang, D.; Pan, V.; Chang, S.; Song, J.; Ke, Y. Journal of the American Chemical Society 2022, 144 (22), 9747-9752. [PDF]
95. DNA Assembly of Modular Components into a Rotary Nanodevice
Peil, A.; Xin, L.; Both, S.; Shen, L.; Ke, Y.; Weiss, T.; Zhan, P.; Liu, N. ACS Nano 2022, 16, 4, 5284–5291. [PDF]
94. Programmable allosteric DNA regulations for molecular networks and nanomachines
Zhang, C.; Ma, X.; Zheng, X.; Ke, Y.; Chen, K.; Liu, D.; Lu, Z.; Yang, J.; Yan, H. Science Advances 2022, 8 (5), eabl4589. [PDF]
93. Shaped DNA origami carrier nanopore translocation influenced by aptamer based surface modification
Ding, T.; Yang, J.; Wang, J.; Pan, V.; Lu, Z.; Ke, Y.; Zhang, C. Biosensors and Bioelectronics 2022, 195, 113658. [PDF]
92. Spatiotemporal Control of Molecular Cascade Reactions by a Reconfigurable DNA Origami Domino Array
Fan, S.; Ji, B.; Liu, Y.; Zou, K.; Tian, Z.; Dai, B.; Cui, D.; Zhang, P.; Ke, Y.; Song, J. Angewandte Chemie 2022, 61 (9), e202116324. [PDF]
2021
91. Blockade of glutamine-dependent cell survival augments antitumor efficacy of CPI-613 in head and neck cancer
Lang, L.; Wang, F.; Ding, Z.; Zhao, X.; Loveless, R.; Xie, J.; Shay, C.; Qiu, P.; Ke, Y.; Saba, N. F.; Teng, Y. Journal of Experimental & Clinical Cancer Research 2021, 40 (1), 393. [PDF]
90. Massively Parallelized Molecular Force Manipulation with On-Demand Thermal and Optical Control
Su, H.; Brockman, J. M.; Duan, Y.; Sen, N.; Chhabra, H.; Bazrafshan, A.; Blanchard, A. T.; Meyer, T.; Andrews, B.; Doye, J. P. K.; Ke, Y.; Dyer, R. B.; Salaita, K. Journal of the American Chemical Society 2021, 143 (46), 19466-19473. [PDF]
89. Divalent Multilinking Bonds Control Growth and Morphology of Nanopolymers
Xiong, Y.; Lin, Z.; Mostarac, D.; Minevich, B.; Peng, Q.; Zhu, G.; Sanchez, P. A.; Kantorovich, S.; Ke, Y.; Gang, O. Nano Letters 2021, 21(24), 10547-10554. [PDF]
88. Monochromatic Fluorescent Barcodes Hierarchically Assembled from Modular DNA Origami Nanorods
Pan, V.; Wang, W.; Heaven, I.; Bai, T.; Cheng, Y.; Chen, C.; Ke, Y.; Wei, B. ACS Nano 2021, 15 (10), 15892-15901. [PDF]
87. Programmable Site‐Specific Functionalization of DNA Origami with Polynucleotide Brushes
Yang, Y.; Lu, Q.; Huang, C. M.; Qian, H.; Zhang, Y.; Deshpande, S.; Arya, G.; Ke, Y.; Zauscher, S. Angewandte Chemie 2021, 60 (43), 23241-23247. [PDF]
86. Mechanically Triggered Hybridization Chain Reaction
Duan, Y.; Glazier, R.; Bazrafshan, A.; Hu, Y.; Rashid, S. A.; Petrich, B. G.; Ke, Y.; Salaita, K. Angewandte Chemie 2021, 60 (36), 19974-19981. [PDF]
85. DNA-Grafted 3D Superlattice Self-Assembly
Wang, S.; Xie, X.; Chen, Z.; Ma, N.; Zhang, X.; Li, K.; Teng, C.; Ke, Y.; Tian, Y. International Journal of Molecular Sciences 2021, 22 (14), 7558. [PDF]
84. DNA Nanotechnology‐Based Biosensors and Therapeutics
Shen, L.; Wang, P.; Ke, Y. Advanced Healthcare Materials 2021, 10 (15), 2002205. [PDF]
83. DNA origami single crystals with Wulff shapes
Wang, Y.; Dai, L.; Ding, Z.; Ji, M.; Liu, J.; Xing, H.; Liu, X.; Ke, Y.; Fan, C.; Wang, P.; Tian, Y. Nature Communications 2021, 12 (1), 3011. [PDF]
82. Accurate genotyping of fragmented DNA using a toehold assisted padlock probe
Gao, Y.; Qiao, H.; Pan, V.; Wang, Z.; Li, J.; Wei, Y.; Ke, Y.; Qi, H. Biosensors and Bioelectronics 2021, 179, 113079. [PDF]
81. High-Throughput Dielectrophoretic Trapping and Detection of DNA Origami
Ghomian, T.; Jeong, H.; Pan, V.; Celik, K.; Alangari, M.; Ke, Y.; Hihath, J. Advanced Materials Interfaces 2021, 8 (5), 2001476. [PDF]
80. Programmable transformations of DNA origami made of small modular dynamic units
Wang, D.; Yu, L.; Huang, C.M.; Arya, G.; Chang, S.; Ke, Y. Journal of the American Chemical Society 2021, 143 (5), 2256-2263. [PDF]
2020
79. Hierarchical Fabrication of DNA Wireframe Nanoarchitectures for Efficient Cancer Imaging and Targeted Therapy
Wang, D.; Peng, R.; Peng, Y.; Deng, Z.; Xu, F.; Su, Y.; Wang, P.; Li, L.; Wang, X.Q.; Ke, Y.; Tan, W. ACS Nano 2020, 14 (12), 17365-17375. [PDF]
78. DNA Origami-Enabled Biosensors
Wang, S.; Zhou, Z.; Ma, N.; Yang, S.; Li, K.; Teng, C.; Ke, Y.; Tian, Y. Sensors 2020, 20 (23), 6899. [PDF]
77. DNA Origami Guided Self-Assembly of Plasmonic Polymers with Robust Long-Range Plasmonic Resonance
Wang, P.; Huh, J. H.; Park, H.; Yang, D.; Zhang, Y.; Zhang, Y.; Lee, J.; Lee, S.; Ke, Y. Nano Letters 2020, 20 (12), 8926-8932. [PDF]
76. Low-Bias Manipulation of DNA Oligo Pool for Robust Data Storage
Gao, Y.; Chen, X.; Qiao, H.; Ke, Y.; Qi, H. ACS Synthetic Biology 2020, 9 (12), 3344-3352. [PDF]
75. Programming the Curvatures in Reconfigurable DNA Domino Origami by Using Asymmetric Units
Wang, D.; Yu, L.; Ji, B.; Chang, S.; Song, J.; Ke, Y. Nano Letters 2020, 20 (11), 8236-8241. [PDF]
74. Engineering Organization of DNA Nano-Chambers through Dimensionally Controlled and Multi-Sequence Encoded Differentiated Bonds
Lin, Z.; Emamy, H.; Minevich, B.; Xiong, Y.; Xiang, S.; Kumar, S. K.; Ke, Y.; Gang, O. Journal of the American Chemical Society 2020, 142 (41), 17531-17542. [PDF]
73. Modular Reconfigurable DNA Origami: From Two-Dimensional to Three-Dimensional Structures
Liu, Y.; Cheng, J.; Fan, S.; Ge, H.; Luo, T.; Tang, L.; Ji, B.; Zhang, C.; Cui, D.; Ke, Y.; Song, J. Angewandte Chemie 2020, 59 (51), 23277-23282. [PDF]
72. Live-cell super-resolved PAINT imaging of piconewton cellular traction forces
Brockman, J. M.; Su, H.; Blanchard, A. T.; Duan, Y.; Meyer, T.; Quach, M. E.; Glazier, R.; Bazrafshan, A.; Bender, R. L.; Kellner, A. V.; Ogasawara, H.; Ma, R.; Schueder, F.; Petrich, B. G.; Jungmann, R.; Li, R.; Mattheyses, A. L.; Ke, Y.; Salaita, K. Nature Methods 2020, 17 (10), 1018-1024. [PDF]
71. Proximity-Induced Pattern Operations in Reconfigurable DNA Origami Domino Array
Fan, S.; Cheng, J.; Liu, Y.; Wang, D.; Luo, T.; Dai, B.; Zhang, C.; Cui, D.; Ke, Y.; Song, J. Journal of the American Chemical Society 2020, 142 (34), 14566-14573. [PDF]
70. Interfacially Bridging Covalent Network Yields Hyperstable and Ultralong Virus-Based Fibers for Engineering Functional Materials
Zhou, K.; Zhou, Y.; Yang, H.; Jin, H.; Ke, Y.; Wang, Q. Angewandte Chemie 2020. [PDF]
69. Programmable assembly of gold nanoparticle nanoclusters and lattices
Shen, L.; Pan, V.; Li, H.; Zhang, Y.; Wang, P.; Ke, Y. Journal of Materials Chemistry B 2020, 8 (31), 6810-6813. [PDF]
68. Information Coding in a Reconfigurable DNA Origami Domino Array
Fan, S.; Wang, D.; Cheng, J.; Liu, Y.; Luo, T.; Cui, D.; Ke, Y.; Song, J. Angewandte Chemie 2020, 59 (31), 12991-12997. [PDF]
67. Programming Surface-Enhanced Raman Scattering of DNA Origami-templated Metamolecules
Zhou, C.; Yang, Y.; Li, H.; Gao, F.; Song, C.; Yang, D.; Xu, F.; Liu, N.; Ke, Y.; Su, S.; Wang, P. Nano Letters 2020, 20 (5), 3155-3159. [PDF]
66. Programmable Assembly of Iron Oxide Nanoparticles Using DNA Origami
Meyer, T. A.; Zhang, C.; Bao, G.; Ke, Y. Nano Letters 2020, 20 (4), 2799-2805. [PDF]
65. Programming Dynamic Assembly of Viral Proteins with DNA Origami
Zhou, K.; Zhou, Y.; Pan, V.; Wang, Q.; Ke, Y. Journal of the American Chemical Society 2020, 142 (13), 5929-5932. [PDF]
64. DNA nanotechnology assisted nanopore-based analysis
Ding, T.; Yang, J.; Pan, V.; Zhao, N.; Lu, Z.; Ke, Y.; Zhang, C. Nucleic Acids Research 2020, 48 (6), 2791-2806. [PDF]
63. Programming the Nucleation of DNA Brick Self-Assembly with a Seeding Strand
Zhang, Y.; Reinhardt, A.; Wang, P.; Song, J.; Ke, Y. Angewandte Chemie 2020, 59 (22), 8594-8600. [PDF]
62. Tunable DNA Origami Motors Translocate Ballistically Over mum Distances at nm/s Speeds
Bazrafshan, A.; Meyer, T. A.; Su, H.; Brockman, J. M.; Blanchard, A. T.; Piranej, S.; Duan, Y.; Ke, Y.; Salaita, K. Angewandte Chemie 2020, 59 (24), 9514-9521. [PDF]
61. RNA imaging in living mice enabled by an in vivo hybridization chain reaction circuit with a tripartite DNA probe
Wu, H.; Chen, T. T.; Wang, X. N.; Ke, Y.; Jiang, J. H. Chemical Science 2020, 11 (1), 62-69. [PDF]
60. Electrostatic Complementarity Drives Amyloid/Nucleic Acid Co-Assembly
Rha, A. K.; Das, D.; Taran, O.; Ke, Y.; Mehta, A. K.; Lynn, D. G. Angewandte Chemie 2020, 59 (1), 358-363. [PDF]
2019
59. Programming DNA Tube Circumference by Tile Offset Connection
Zhang, Y.; Chen, X.; Kang, G.; Peng, R.; Pan, V.; Sundaresan, R.; Wang, P.; Ke, Y. Journal of the American Chemical Society 2019, 141 (50), 19529-19532. [PDF]
58. DNA‐Guided Assembly of Molecules, Materials, and Cells
Yang, D.; Zhou, C.; Gao, F.; Wang, P.; Ke, Y. Advanced Intelligent Systems 2019, 2 (1). [PDF]
57. Nicking-Assisted Reactant Recycle to Implement Entropy-Driven DNA Circuit
Zhang, C.; Wang, Z.; Liu, Y.; Yang, J.; Zhang, X.; Li, Y.; Pan, L.; Ke, Y.; Yan, H. Journal of the American Chemical Society 2019, 141(43), 17189-17197. [PDF]
56. Self-Assembly of DNA−Minocycline Complexes by Metal Ions with Controlled Drug Release
Zhang, T.; Nong, J.; Alzahrani, N.; Wang, Z.; Oh, S. W.; Meier, T.; Yang, D. G.; Ke, Y.; Zhong, Y.; Fu, J. ACS Applied Materials & Interfaces 2019, 11(33), 29512-29521. [PDF]
55. Magnetic Plasmon Networks Programmed by Molecular Self‐Assembly
Wang, P.; Huh, J. H.; Lee, J.; Kim, K.; Park, K. J.; Lee, S.; Ke, Y. Advanced Materials 2019, 31(29), 1901364. [PDF]
54. Hierarchical Self-Assembly of Cholesterol-DNA Nanorods
Zhang, Y.; Peng, R.; Xu, F.; Ke, Y. Bioconjugate Chemistry 2019, 30(7), 1845-1849. [PDF]
53. Dynamic DNA Structures
Zhang, Y.; Pan, V.; Li, X.; Yang, X.; Li, H.; Wang, P.; Ke, Y. Small 2019, 15(26), 1900228. [PDF]
52. Biomimetic Compartments Scaffolded by Nucleic Acid Nanostructures
Fu, J.; Oh, S. W.; Monckton, K.; Arbuckle‐Keil, G.; Ke, Y.; Zhang, T. Small 2019, 15(26), 1099256. [PDF]
51. Complex wireframe DNA nanostructures from simple building blocks
Wang, W.; Chen, S.; An, B.; Huang, K.; Bai, T.; Xu, M.; Bellot, G.; Ke, Y.; Xiang, Y.; Wei, B. Nature Communications 2019, 10(1), 1067. [PDF]
2018
50. Attack on the Cell Membrane: The Pointy Ends of DNA Nanostructures Lead the Way
Wang, P.; Ke, Y. ACS Central Science 2018, 4(10), 1298-1299. [PDF]
49. Design and operation of reconfigurable two-dimensional DNA molecular arrays
Wang, D.; Song, J.; Wang, P.; Pan, V.; Zhang, Y.; Cui D.; Ke, Y. Nature Protocols 2018, 13(10), 2312. [PDF]
48. Selective in Situ Assembly of Viral Protein onto DNA Origami
Zhou, K.; Ke, Y.; Wang, Q. Journal of the American Chemical Society 2018, 140(26), 8074-8077. [PDF]
47. Programmable multivalent DNA-origami tension probes for reporting cellular traction forces
Dutta, P.K.; Zhang, Y.; Blanchard, A.; Ge, C.; Rushdi, M.; Weiss, K.; Zhu, C.; Ke, Y.; Salaita, K. Nano Letters 2018, 18(8), 4803-4811. [PDF]
46. Advanced Cell and Tissue Biomanufacturing
Ye, K.; Kaplan, D.L.; Bao, Gang.; Bettinger, C.; Forgacs, G.; Dong, C.; Khademhosseini, A.; Ke, Y.; Leong, K.; Sambanis, A.; Sun, W.; Yin, P. ACS Biomaterials Science & Engineering 2018, 4(7), 2292-2307. [PDF]
45. Structural DNA Nanotechnology: Artificial Nanostructures for Biomedical Research
Ke, Y.; Castro, C.; Choi, J. H. Annual Review of Biomedical Engineering 2018, 20(1), 375-401. [PDF]
44. Visualization of the Cellular Uptake and Trafficking of DNA Origami Nanostructures in Cancer Cells
Wang, P.; Rahman, M.A.; Zhao, Z.; Weiss, K.; Zhang, C.; Chen, Z.; Hurwitz, S.J.; Chen, Z.G.; Shin, D.M.; Ke, Y. Journal of the American Chemical Society 2018, 140(7), 2478-2484. [PDF]
2017
43. Practical aspects of structural and dynamic DNA nanotechnology
Wang, P.; Gourab, C.; Yan, H.; LaBean, T.H.; Turberfield, A.J.; Castro, C.E.; Georg, S.; Ke, Y. MRS Bulletin 2017, 42(12), 889-896. [PDF]
42. Programmable self-assembly of three-dimensional nanostructures from 10000 unique components
Ong, L.L.; Hanikel, N.; Yaghi, O.K.; Grun, C.; Strauss, M.T.; Bron, P.; Lai-Kee-Him, J.; Schueder, F.; Wang, B.; Wang, P.; Kishi, J.Y.; Myhrvold, C.A.; Zhu, A.; Jungmann, R.; Bellot, G.; Ke, Y.; Yin, P. Nature 2017, 552(7683), 72-77. [PDF]
41. Systemic Delivery of Bcl2-Targeting siRNA by DNA Nanoparticles Suppresses Cancer Cell Growth
Rahman, M.A.; Wang, P.; Zhao, Z.; Wang, D.; Nannapaneni, S.; Zhang, C.; Chen, Z.; Griffith, C.C.; Hurwitz, S.J.; Chen, Z.G.; Ke, Y.; Shin, D.M. Angewandte Chemie 2017, 56(50), 16023-16027. [PDF]
40. Programmable Supra-Assembly of DNA Surface Adapter for Tunable Chiral Directional Self-Assembly of Gold Nanorods
Lan, X.; Su, Z.; Zhou, Y.; Meyer, T.; Ke, Y.; Wang, Q.; Chiu, W.; Liu, N.; Zou, S.; Yan, H.; Liu, Y. Angewandte Chemie 2017, 56(46), 14632-14636. [PDF]
39. Structurally Ordered Nanowire Formation from Co-Assembly of DNA Origami and Collagen-Mimetic Peptides
Jiang, T.; Meyer, T.; Modlin, C.; Zou, X.; Conticello, V.P.#; Ke, Y. Journal of the American Chemical Society 2017, 139(40), 14025. [PDF]
38. Template-free reconstruction of nanomolecular structures fromnanoscopy images with isotropic 3D resolution
Salas, D.; Gall, A. L.; Fiche, J.B.; Valeri, A.; Ke, Y.; Bron, P.; Bellot, G.; Nollmann, M. Proceedings of the National Academy of Sciences 2017, 114(35), 9273-9278. [PDF]
37. Reconfiguration of DNA Molecular Arrays Driven by Information Relay
Song, J.; Li, Z.;, Wang, P.; Meyer, T.; Mao, C.; Ke, Y. Science 2017, 357(6349) doi: 10.1126/science.aan3377. [PDF]
36. The Beauty and Utility of DNA Origami
Wang, P.; Meyer, T.A.; Pan, V.; Dutta, P.K.; Ke, Y. Chem 2017, 2(3), 239. [PDF]
35. Reconfigurable Three-Dimensional Gold Nanorod Plasmonic Nanostructures Organized on DNA Origami Tripod
Zhan, P.; Dutta, P.K.; Wang, P.; Song G.; Dai, M.; Zhao, S.; Wang, Z.; Yin, P.; Zhang, W.; Ding, B.; Ke, Y. ACS Nano 2017, 11(2), 1172-1179. doi:10.1021/acsnano.6b06861. [PDF]
2016
34. Programming Self-Assembly of DNA Origami Honeycomb Two-Dimensional Lattices and Plasmonic Metamaterials
Wang, P.; Gaitanaros, S.; Lee, S.; Bathe, M.; Shih, W. M.; Ke, Y. Journal of the American Chemical Society 2016, 138(24), 7733 [PDF]
33. Plasmonic Toroidal Metamolecules Assembled by DNA Origami
Urban, M.J.; Dutta, P.K.; Wang, P.; Duan, X.; Shen, X.; Ding, B.; Ke, Y.; Liu, N. Journal of the American Chemical Society 2016, 138(17), 5495. [PDF]
32. Regulation at a distance of biomolecular interactions using a DNA origami nanoactuator
Ke, Y.; Meyer, T.; Shih, W.M.; Bellot, G. Nature Communications. 2016, 18(7),10935. doi: 10.1038/ncomms10935. [PDF]
31. Programmable DNA Hydrogels Assembled from Multi-Domain DNA Strands
Jiang, H.; Pan, V.; Vivek, S.; Weeks, E. R.; Ke, Y. ChemBioChem 2016, 17, 1156–1162. [PDF]
30. Site-Specific Surface Functionalization of Gold Nanorods Using DNA Origami Clamps
Shen, C.; Lan, X.; Lu, X.; Meyer, T. A.; Ni, W.; Ke, Y.; Wang, Q. Journal of the American Chemical Society 2016, 138(6), 1764-1767. [PDF]
2015
29. Nucleic Acid Based Nanoreactors—Toward the Study of Multienzymatic Pathways
Dutta, P.: Meyer, T. A.; Ke, Y. Advanced Science, Engineering and Medicine 2015, 7(12), 1009-1018. [PDF]
28. Prescribed nanoparticle cluster architectures and low-dimensional arrays built using octahedral DNA origami frames
Tian, Y.; Wang, T.; Liu, W.; Xin, H.; Li, H.; Ke, Y.; Shih, W.; Gang, O. Nature Nanotechnology 2015, 10(7), 637-644. [PDF]
27. Au Nanorod Helical Superstructures with Designed Chirality
Lan, X.; Lu, X.; Shen, C.; Ke, Y.; Ni, W.; & Wang, Q. Journal of the American Chemical Society 2015, 137(1), 457-462. [PDF]
2014
26. DNA Brick Crystals with Prescribed Depth
Ke, Y.; Ong, L. L.; Sun, W.; Song, J.; Dong, M.; Shih, W. M.; Yin, P. Nature Chemistry 2014, 6, 994-1002. [PDF]
25. Designer three-dimensional DNA architectures
Ke, Y. Current Opinions in Structural Biology 2014, 27C, 122-128. [PDF]
24. Polyhedra Self-Assembled from DNA Tripods and Characterized with 3D DNA-PAINT
Iinuma, R.; Ke, Y.; Jungmann, R.; Schlichthaerle, T.; Woehrstein, J.; Yin, P. Science 2014, 344, 65–69. [PDF]
Media coverage: Wyss News Release, Nanotechnology Now, Veooz, Brunch News, Science Daily, Machines Like Us, Nanowerk, Harvard Gazette, Phys.org, Biomedicine, Science Codex, The Emory Health Sciences Research Blog, Tech Times, e! Science News, Microscopy and Analysis, HNGN, USA News, Newsfiber, Fierce Drug Delivery, Nolet, w8.ns
23. DNA Origami Structures Directly Assembled from Intact Bacteriophages
Nickels, P.; Ke, Y.; Jungmann, R.; Smith, D.; Leichsenring, M.; Shih, W.; and Liedl, T.; Hogberg, B. Small 2014, 10, 1765–1769. [PDF]
Before 2014
22. Design Space for Complex DNA Structures
Wei, B.; Dai, M.; Myhrvold, C.; Ke, Y.; Jungmann, R.; Yin, P. Journal of the American Chemical Society 2013, 135, 18080-18088. [PDF]
21. Metalized DNA Nanolithography for Encoding and Transferring Spatial Information for Graphene Patterning
Jin, Z.; Sun, W.; Ke, Y.; Shih, C.; Paulus, G. L. C.; Wang, Q. H.; Mu, B.; Yin, P.; Strano, M. S. Nature Communications 2013, 4, 1663-1671. [PDF]
Media coverage: MIT new release, SciTech Daily, Electronic News, ExtremeTech, Paste Magazine, Physics Buzz, The Verge, Digital Manufacturing Report
20. Three-Dimensional Structures Self-Assembled from DNA Bricks
Ke, Y.; Ong, L. L.; Shih, W. M.; Yin, P. Science 2012, 338, 1177-1183. [PDF]
Academic commentaries on this paper: “LEGO-like DNA Structures”, Gothelf, K. V. Science 2012, 338, 1159-1160. [Link]
Highlighted on Science cover November 30th issue, Science photo slideshow.
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19. Two Design Strategies for Enhancement of Multilayer–DNA-Origami Folding: Underwinding for Specific Intercalator Rescue and Staple-Break Positioning
Ke, Y.; Bellot, G.; Voigt, N.; Fradkov, E. Chemical Science 2012, 3, 2587–2597. [PDF]
18. Multilayer DNA Origami Packed on Hexagonal and Hybrid Lattices
Ke, Y.; Voigt, N. V.; Gothelf, K. V.; Shih, W. M. Journal of the American Chemical Society 2012, 134, 1770–1774. [PDF]
17. Multilayer DNA Origami Packed on a Square Lattice
Ke, Y.; Douglas, S. M.; Liu, M.; Sharma, J.; Cheng, A.; Leung, A.; Liu, Y.; Shih, W. M.; Yan, H. Journal of the American Chemical Society 2009, 131, 15903–15908. [PDF]
16. Scaffolded DNA Origami of a DNA Tetrahedron Molecular Container
Ke, Y.; Sharma, J.; Liu, M.; Jahn, K.; Liu, Y.; Yan, H. Nano Letters 2009, 9, 2445–2447. [PDF]
15. Controlled Delivery of DNA Origami on Patterned Surfaces
Gerdon, A. E.; Oh, S. S.; Hsieh, K.; Ke, Y.; Yan, H.; Soh, H. T. Small 2009, 5, 1942–1946. [PDF]
14. Mirror Image DNA Nanostructures for Chiral Supramolecular Assemblies
Lin, C.; Ke, Y.; Li, Z.; Wang, J. H.; Liu, Y.; Yan, H. Nano Letters 2009, 9, 433–436. [PDF]
13. Self-Assembled Water-Soluble Nucleic Acid Probe Tiles for Label-Free RNA Hybridization Assays
Ke, Y.; Lindsay, S.; Chang, Y.; Liu, Y.; Yan, H. Science 2008, 319, 180–183. [PDF]
Academic commentaries on this paper: “Tiny tiles, tiny targets”, Giljohann, D. A.; Mirkin, C. Nature Biotechnology 2008, 26, 299–300. “An origami chip of DNA”, Kaganman, I. Nature Methods 2008, 5, 222.
Highlighted on Arizona State University homepage.
Media coverage: Reuters, Sciencedaily.com, Physorg.com, Eurekalert.org, Nextbigfuture.com, Biosingularity.com, Nanotech-now.com, Medicalnewstoday.com, Internetchemie.info, and many other news agencies.
12. Developing DNA Tiles for Oligonucleotide Hybridization Assay with Higher Accuracy and Efficiency
Ke, Y.; Nangreave, J.; Yan, H.; Lindsay, S.; Liu, Y. Chemical Communications 2008, 5622–5624. [PDF]
11. Self-assembled DNA Nanostructures for Distance-Dependent Multivalent Ligand-Protein Binding
Rinker, S.*; Ke, Y.*; Liu, Y.; Chhabra, R.; Yan, H. Nature Nanotechnology 2008, 3, 418–422. [PDF]
10. DNA-Tile-Directed Self-Assembly of Quantum Dots into Two-Dimensional Nanopatterns
Sharma, J.; Ke, Y.; Lin, C.; Chhabra, R.; Wang, Q.; Nangreave, J.; Liu, Y.; Yan, H. Angewandte Chemie 2008, 47, 5157–5159. [PDF]
9. Quantum Dot Bioconjugation during Core-Shell Synthesis
Wang, Q.; Liu, Y.; Ke, Y.; Yan, H. Quantum Dot Bioconjugation during Core-Shell Synthesis. Angewandte Chemie 2008, 47, 316–319. [PDF]
8. Subtractive Assembly of DNA Nanoarchitectures Driven by Fuel Strand Displacement
Li, Z.; Ke, Y.; Lin, C.; Yan, H.; Liu, Y. Chemical Communications 2008, 4318–4320. [PDF]
7. Functional DNA Nanotube Arrays: Bottom-Up Meets Top-Down
.Lin, C.; Ke, Y.; Liu, Y.; Mertig, M.; Gu, J.; Yan, H. Angewandte Chemie 2007, 46, 6089–6092. [PDF]
6. Spatially Addressable Multiprotein Nanoarrays Templated by Aptamer-Tagged DNA Nanoarchitectures
Chhabra, R.; Sharma, J.; Ke, Y.; Liu, Y.; Rinker, S.; Lindsay, S.; Yan, H. Journal of the American Chemical Society 2007, 129, 10304–10305. [PDF]
Highlighted by the editors of Nature Nanotechnology as “Research Highlight”: (http://www.nature.com/nnano/reshigh/2007/0807/full/nnano.2007.287.html).
5. A Study of DNA Tube Formation Mechanisms Using 4-, 8-, and 12-Helix DNA Nanostructures
Ke, Y.; Liu, Y.; Zhang, J.; Yan, H. Journal of the American Chemical Society 2006, 128, 4414–4421. [PDF]
4. Periodic Square-Like Gold Nanoparticle Arrays Templated by Self-Assembled 2D DNA Nanogrids on a Surface
Zhang, J.; Liu, Y.; Ke, Y.; Yan, H. Periodic Square-Like Gold Nanoparticle Arrays Templated by Self-Assembled 2D DNA Nanogrids on a Surface. Nano Letters 2006, 6, 248–251. [PDF]
Featured in physorg.com: (http://www.physorg.com/news11996.html) and the top 10 most cited papers published in Nano Lett. in 2006
3. DNA Nanotechnology: a Rapidly Evolving Field
Lund, K.; Williams, B.; Ke, Y.; Liu, Y.; Yan, H. Current Nanoscience 2006, 2, 113–122.
2. DNA-Templated Self-Assembly of Two-Dimensional and Periodical Gold Nanoparticle Arrays
Sharma, J.; Chhabra, R.; Liu, Y.; Ke, Y.; Yan, H. Angewandte Chemie 2006, 45, 730–735. [PDF]
1. Self-Assembly of Symmetric Finite-Size DNA Nanoarrays
Liu, Y.; Ke, Y.; Yan, H. Journal of the American Chemical Society 2005, 127, 17140–17141. [PDF]
Highlighted in Nature Material Science and Nanotechnology as a nanozone news: (http://www.nature.com/materals/nanozone/news/060105/potal/m060105-2.html)
